序号论文
[1]Shen F#, He H#, Huang X, Deng Y, Yang X. Insights into the convergent evolution of fructan biosynthesis in angiosperms from the highly characteristic chicory genome. New Phytologist, 2023.
[2]Kuang Z#, Zhao Y#, Yang X. Plant microRNA identification and annotation using deep sequencing data. Methods in Molecular Biology, 2023.
[3]Jiantao Guan#, Jintao Zhang#, Dan Gong#, Zhengquan Zhang, Yang Yu, Gaoling Luo, Prakit Somta, Zheng Hu, Suhua Wang, Xingxing Yuan, Yaowen Zhang, Yanlan Wang, Yanhua Chen, Kularb Laosatit, Xin Chen, Honglin Chen, Aihua Sha, Xuzhen Cheng, Hua Xie* & Lixia Wang*. Genomic analyses of rice bean landraces reveal adaptation and yield related loci to accelerate breeding. Nature Communications, 2022, 13:5707.
[4]Guo Y, Qiu T, Gao M, Ru S, Gao H, Wang X*. Does increasing the organic fertilizer application rate always boost the antibiotic resistance level in agricultural soils? Environmental Pollution, 2023, 322: 121251
[5]Xin H#, Gao M#, Wang X#, Qiu T, Guo Y, Zhang L*. Animal farms are hot spots for airborne antimicrobial resistance. Science of the Total Environment, 2022, 851: 158050
[6]Gao M, Yu A, Chen M, Qiu T, Guo Y, Sun X*, Wang X*. Airborne fungi and human exposure in different areas of composting facilities. Ecotoxicology and Environmental Safety, 2022, 243: 113991
[7]Shen L, Qiu T, Guo Y, Gao M, Gao H, Zhao G*, Wang X*. Enhancing control of multidrug-resistant plasmid and its host community with a prolonged thermophilic phase during composting. Frontiers in Microbiology, 2022, 13: 989085.
[8]Qiu T, Huo L, Guo Y, Gao M, Wang G, Hu D, Li C, Wang Z, Liu G*, Wang X*. Metagenomic Assembly Reveals Hosts and Mobility of Common Antibiotic Resistome in Animal Manure and Commercial Compost. Environmental Microbiome, 2022, 17: 42
[9]Zhang Y, Guo Y, Qiu T, Gao M, Wang X*. Bacteriophages: underestimated vehicles of antibiotic resistance genes in the soil. Frontiers in Microbiology, 2022, 13:936267.
[10]Gao M, Zhang X, Yue Yang, Qiu T, Wang Jing*, Wang X*. Air path of antimicrobial resistance related genes from layer farms: Emission inventory, atmospheric transport, and human exposure. Journal of Hazardous Materials, 2022, 430: 128417
序号论文
[11]Guo Z, Kuang Z, Deng Y, Li L*, Yang X*. Identification of species-specific microRNAs provides insights into dynamic evolution of microRNAs in plants. International Journal of Molecular Sciences, 2022.
[12]Guo Z, Kuang Z, Tao Y, Wang H, Wan M, Hao C, Shen F, Yang X*, Li L*. Miniature inverted-repeat transposable elements drive rapid microRNA diversification in angiosperms. Molecular Biology and Evolution, 2022.
[13]Yang X*, Unver T, Zhang X, Li L. Editorial: Regulatory roles and mechanisms of microRNAs in plant development, evolution, and adaptation. Frontiers in Plant Science, 2022.
[14]Guo Z#, Li B#, Du J#, Shen F, Zhao Y, Deng Y, Kuang Z, Tao Y, Wan M, Lu X, Wang D, Wang Y, Han Y, Wei J, Li L, Guo X*, Zhao C*, Yang X*. LettuceGDB: the community database for lettuce genetics and omics. Plant Communications, 2022.
[15]Du J, Li B, Lu X, Yang X*, Guo X*, Zhao C*. Quantitative phenotyping and evaluation for lettuce leaves of multiple semantic components. Plant Methods, 2022.
[16]Jiang Y, Zhang H, Li Y, Chang C, Wang Y, Feng H, Li R*. A novel transcriptional Regulator HbERF6 regulates the HbCIPK2-coordinated pathway conferring Salt tolerance in halophytic Hordeum brevisubulatum, Frontiers in plant science, 2022, 13:1-14
[17]Deng, Y., Zhang, H., Wang, H., Xing, G., Lei, B., Kuang, Z., Zhao, Y., Li, C., Dai, S., Yang, X., et al. The Construction and Exploration of a Comprehensive MicroRNA Centered Regulatory Network in Foxtail Millet (Setaria italica L.). Front Plant Sci, 2022, 13, 848474.
[18]Li, C., Ma, J., Wang, G., Li, H., Wang, H., Wang, G., Jiang, Y., Liu, Y., Liu, G., Liu, G., et al. Exploring the SiCCT Gene Family and Its Role in Heading Date in Foxtail Millet. Front Plant Sci, 2022, 13, 863298.
[19]Zuoping Wang#, Zhongbao Zhang#, Dengyu Zheng, Tongtong Zhang, Xianglong Li, Chun Zhang, Rong Yu,Jianhua Wei, Zhongyi Wu. Efficient and genotype independent maize transformation using pollen transfected by DNA-coated magnetic nanoparticles. Journal of Integrative Plant Biology, 2022, 64: 1145–1156.
[20]Xiaorong Sun, Xiaofeng Xue, Xiaqing Wang, Chun Zhang, Dengyu Zheng, Wei Song, Jiuran Zhao, Jianhua Wei, Zhongyi Wu, Zhongbao Zhang*. Natural variation of ZmCGT1 is responsible for the isoorientin accumulation in maize silk. Plant Journal, 2022, 109: 64–76.
序号论文
[21]Zhongbao Zhang#, Xiaoqin Tan#, Xiaorong Sun, Jianhua Wei*, Qing X. Li*, Zhongyi Wu*. Isoorientin affects markers of Alzheimer's disease via effects on the oral and gut microbiota in APP/PS1 mice. Journal of Nutrition, 2022, 152: 140–152.
[22]Tongtong Zhang, Dengyu Zheng, Chun Zhang, Zhongyi Wu, Rong Yu*, Zhongbao Zhang*. Heterologous expression of ZmNF‑YA12 confers tolerance to drought and salt stress in Arabidopsis. Plant Biotechnology Reports (2022) 16:437–448.
[23]Xiaohong Sun, Jingrao Chen, Wenhong Fan, ShuLiu*. Mohammed mruzzaman Production of reactive oxygen species via nanobubble water improves radish seed water absorption and the expression of aquaporin genes. Langmuir, 2022, 38(38):11724-11731.
[24]Xiaoyu Ma, Ming Gao, Yuan Li, Qunhui Wang, Xiaohong Sun*. Production of cellulase by Aspergillus niger through fermentation of spentmushroom substance: Glucose inhibition and elimination approaches. Process Biochemistry, 2022, 122:26-35.
[25]Jiantao Guan#, Yaoguang Xu#, Yang Yu#, Jun Fu, Fei Ren, Jiying Guo, Jianbo Zhao, Quan Jiang*, Jianhua Wei* & Hua Xie*. Genome structure variation analyses of peach reveal population dynamics and a 1.67 Mb causal inversion for fruit shape. Genome Biology, 2021, 22:13.
[26]Jiantao Guan#, Yaoguang Xu#, Yang Yu#, Jun Fu, Fei Ren, Jiying Guo, Jianbo Zhao, Quan Jiang*, Jianhua Wei* & Hua Xie*. Genome structure variation analyses of peach reveal population dynamics and a 1.67 Mb causal inversion for fruit shape. Genome Biology, 2021, 22:13.
[27]Guo Z#, Kuang Z#, Zhao Y#, Deng Y#, He H, Wan M, Tao Y, Wang D, Wei J, Li L*, Yang X*. PmiREN2.0: from data annotation to functional exploration of plant microRNAs. Nucleic Acids Research, 2021.
[28]Deng Y#, Qin Y#, Yang P#, Du J#, Kuang Z, Zhao Y, Wang Y, Li D, Wei J, Guo X*, Li L*, Yang X*. Comprehensive annotation and functional exploration of microRNAs in lettuce. Frontiers in Plant Science, 2021.
[29]Du J, Fan J, Wang C, Lu X, Zhang Y, Wen W, Liao S, Yang X*, Guo X*, Zhao C*. Greenhouse-based vegetable high-throughput phenotyping platform and trait evaluation for large-scale lettuces. Computers and Electronics in Agriculture, 2021.
[30]Zhao Y#, Kuang Z#, Wang Y, Li L*, Yang X*. MicroRNA annotation in plants: current status and challenges. Briefings in Bioinformatics, 2021.
序号论文
[31]Yang X*, Fishilevich E, German MA, Gandra P, McEwan ER, Billion A, Knorr E, Vilcinskas A, Narva KE*. Elucidation of the microRNA Transcriptome in Western Corn Rootworm Reveals Its Dynamic and Evolutionary Complexity. Genomics Proteomics Bioinformatics, 2021.
[32]Yin X, Romero-Campero FJ, de Los Reyes P, Yan P, Yang J, Tian G, Yang X, Mo X, Zhao S, Calonje M, Zhou Y. H2AK121ub in Arabidopsis associates with a less accessible chromatin state at transcriptional regulation hotspots. Nature Communications, 2021.
[33]Li, C., Wang, G., Li, H., Wang, G., Ma, J., Zhao, X., Huo, L., Zhang, L., Jiang, Y., Zhang, J., et al. High-depth resequencing of 312 accessions reveals the local adaptation of foxtail millet. Theor Appl Genet, 2021, 134, 1303-1317.
[34]Zheng L, Yang J, Chen Y, Ding L, Wei J*, Wang H*: An improved and efficient method of Agrobacterium syringe infiltration for transient transformation and its application in the elucidation of gene function in poplar. BMC Plant Biology, 2021, 21：54
[35]Guo Y, Qiu T, Gao M, Sun Y, Cheng S, Gao H, Wang X*. Diversity and abundance of antibiotic resistance genes in rhizosphere soil and endophytes of leafy vegetables: Focusing on the effect of the vegetable species. Journal of Hazardous Materials, 2021, 415: 125595
[36]Zhang S, Fan Y, Zhang N, Wang X*. Relationship between denitrification performance and microbial community structure in a PHBV-supported denitrification reactor. Desalination and Water Treatment, 2021, 215: 23-30
[37]Qiu T, Wu D, Zhang L, Zou D, Sun Y, Gao M, Wang X*. A comparison of antibiotics, antibiotic resistance genes, and bacterial community in broiler and layer manure following composting. Environmental Science and Pollution Research. 2021, 28 (12): 14707-14719
[38]Cheng S, Chen M, Gao M, Qiu T, Tian S*, Li S, Wang X*. Effects of Enterococcus faecalis administration on the community structure of airborne bacteria in weanling piglet and layer hen houses. The Journal of General and Applied Microbiology, 2021, 67: 162–169
[39]Gao M#, Yang Z#, Guo Y, Chen M, Qiu T, Sun X*, Wang X*. The size distribution of airborne bacteria and human pathogenic bacteria in a commercial composting plant. Front. Environ. Sci. Eng. 2021, 15 (3): 39
[40]Sun Y, Guo Y, Shi M, Qiu T, Gao M, Tian S*, Wang X*. Effect of antibiotic type and vegetable species on antibiotic accumulation in soil-vegetable system, soil microbiota, and resistance genes. Chemosphere, 2021, 263: 128099
序号论文
[41]Du J, Lu X, Fan J, Qin Y, Yang X*, Guo X*. Image-Based High-Throughput Detection and Phenotype Evaluation Method for Multiple Lettuce Varieties. Frontiers in Plant Science, 2020.
[42]Guo Z#, Kuang Z#, Wang Y#, Zhao Y#, Tao Y, Cheng C, Yang J, Lu X, Hao C, Wang T, Cao X, Wei J, Li L*, and Yang X*. PmiREN: a comprehensive encyclopedia of plant miRNAs. Nucleic Acids Research, 2020.
[43]Zhang H#, Feng H#, Zhang J, Ge R, Zhang L, Wang Y, Li L, Wei J, Li R*. Emerging crosstalk between two signaling pathways coordinates K+ and Na+ homeostasis in the halophyte Hordeum brevisubulatum. Journal of Experimental Botany, 2020, 71(14): 4345-4358
[44]Zhang H, Xiao W, Yu W, Jiang Y, Li RF*. Halophytic Hordeum brevisubulatum HbHAK1 facilitates potassium retention and contributes to salt tolerance. International Journal of Molecular Sciences, 2020, 21(15): 5292
[45]Zhang L，Wang Y，Zhang Q，Jiang Y，Zhang H，Li R*. Overexpression of HbMBF1a, encoding multiprotein bridging factor 1 from the halophyte Hordeum brevisubulatum, confers salinity tolerance and ABA insensitivity in transgenic Arabidopsis thaliana. Plant Molecular Biology, 2020, 102(1-2):1-17
[46]Ding, L., Chen, Y., Ma, Y., Wang, H*., and Wei, J*. Effective reduction in chimeric mutants of poplar trees produced by CRISPR/Cas9 through a second round of shoot regeneration. Plant Biotechnology Reports, 2020, 14, 549-558.
[47]Lin Zheng#, Yajuan Chen#, Dong Ding, Ying Zhou, Liping Ding, Jianhua Wei*, Hongzhi Wang*, Endoplasmic reticulum–localized UBC34 interaction with lignin repressors MYB221 and MYB156 regulates the transactivity of the transcription factors in Populus tomentosa. BMC Plant Biology, 2019.
[48]48Chun Zhang, Xianglong Li, Zuoping Wang, Zhongbao Zhang*, Zhongyi Wu*. Identifying key regulatory genes of maize root growth and development by RNA sequencing. Genomics, 2020, 112: 5157–5169.
[49]Cheng S, Shi M, Xing L, Wang X*, Gao H, Sun Y*. Sulfamethoxazole affects the microbial composition and antibiotic resistance gene abundance in soil and accumulates in lettuce. Environmental Science and Pollution Research, 2020, 27: 29257–29265
[50]Sun Y, Qiu T, Gao M, Shi M, Zhang H, Wang X*. Inorganic and organic fertilizers application enhanced 1 antibiotic resistome in greenhouse soils growing vegetables. Ecotoxicology and Environmental Safety, 2019, 179: 24-30.
序号论文
[51]Yu Y et al.Genome re-sequencing reveals the evolutionary history of peach fruit edibility. Nature Communications, 2018, 9: 5404
[52]Gao M et al.The abundance and diversity of antibiotic resistance genes in the atmospheric environment of composting plants. Environment International, 2018, 116: 229–238
[53]Zhang S et al.Bioaugmentation with Diaphorobacter polyhydroxybutyrativorans to enhance nitrate removal in a poly (3-hydroxybutyrate-co-3-hydroxyvalerate)-supported denitrification reactor. Bioresource Technology, 2018, 263: 499-507
[54]Zhang Z et al. Distribution of four bioactive flavonoids in maize tissues of five varieties and correlation with expression of the biosynthetic genes. Journal of Agricultural and Food Chemistry, 2018，66: 10431−10437
[55]Xie H et al.First Report of Pectobacterium aroidearum Causing Soft Rot of Chinese Cabbage in China. Plant Disease, 2018, 102(3): 674
[56]Chen D et al.First Report of Chrysanthemum Stem Blight and Dieback Caused by Tomato spotted wilt virus in China. Plant Disease, 2018, 102 (5): 1047-1048
[57]Gao Jet al.Caulobacter zeaesp. nov. and Caulobacter radicissp. nov., novel endophytic bacteria isolated from maize root (Zea mays L.). Systematic and Applied Microbiology, 2018, 41 (6): 604-610
[58]Yin A et al. Poly-γ-glutamic acid improves the drought resistance of maize seedlings by adjusting the soil moisture and microbial community structure. Applied Soil Ecology, 2018, 129: 128–135
[59]Bi Y et al.Chloroplast genomic resources for phylogeny and DNA barcoding: a case study on Fritillaria. Scientific Reports, 2018, 8:1184
[60]Zhang H et al.Foxtail millet SiHAK1 excites extreme high-affinity K+uptake to maintain K+homeostasis under low K+or salt stress. Plant Cell Reports, 2018, 37(11): 1533-1546
序号论文
[61]Li Xet al. First report of Pseudomonas marginalis isolated from celery with symptom of stem rot in China. Journal of Plant Pathology, 2018, 100 (3): 585
[62]Ding L et al. Efficacy of Cry1Ac protein against gypsy moth and fall webworm in transgenic poplar (Populus davidiana × Populus bolleana) by bioassay. Canadian Journal of Plant Science, 2018, 98(4): 44-850
[63]Zhang Z et al. The complete genome sequence of Bacillus halotoleransZB201702 isolated from a drought- and salt-stressed rhizosphere soil. Microbial Pathogenesis, 2018, 123: 246−249
[64]Gao M et al. Size-related bacterial diversity and tetracycline resistance gene abundance in the air of concentrated poultry feeding operations. Environmental Pollution, 2017, 220: 1342-1348
[65]Du Y et al.Genome size diversity in Lilium (Liliaceae) is correlated with karyotype and environmental traits. Frontiers in Plant Science, 2017, 8: 1303
[66]Du Y et al.Complete chloroplast genome sequences of Lilium : insights into evolutionary dynamics and phylogenetic analyses. Scientific Reports, 2017, 7: 5751
[67]Ding L et al. Laboratory evaluation of transgenic Populus davidiana × Populus bolleana expressing Cry1Ac+SCK, Cry1Ah3, and Cry9Aa3 genes against gypsy moth and fall webworm. PLOS ONE, 2017, 12 (6): e0178754
[68]Qiu Tet al.Bacterial community dynamics in a biodenitrification reactor packed with polylactic acid/poly (3-hydroxybutyrate-co-3-hydroxyvalerate) blend as the carbon source and biofilm carrier. Journal of Bioscience and Bioengineering, 2017, 123 (5): 606-612
[69]Gao Jet al.Rhizobium wenxiniaesp. nov., an endophytic bacterium isolated from maize root. International Journal of Systematic and Evolutionary Microbiology, 2017, 67: 2798–2803
[70]Gao Jet al.Microbacterium zeae sp. nov., an endophytic bacterium isolated from maize stem. Antonie van Leeuwenhoek, 2017, 110: 697–704
